feat: reconcile GLS registry into runtime manifest v2
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@ -9,7 +9,9 @@ REPO-012 contains dozens of numbered GLS protocol sources. Human-readable source
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## Decision
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Compile the current numbered GLS sources into a deterministic registry pinned to an exact REPO-012 commit. Every selected source records its stable GLS number, path and SHA-256. Duplicate historical source locations are resolved by a deterministic source preference, while alternate-source counts remain visible.
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Compile the current numbered GLS sources into a deterministic v2 runtime manifest pinned to an exact REPO-012 commit. Every selected source records its stable GLS number, path and SHA-256. Duplicate historical source locations are resolved by a deterministic source preference, while alternate-source counts remain visible. The compiler also reconciles the protocol registry, GLS entry, source manifest, architecture catalog and routing references, preserving their independent source hashes and rejecting registration conflicts.
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Legacy `depends` arrays are not silently interpreted as runtime edges. They remain `LEGACY_UNTYPED_REFERENCE` audit edges and block new activation until their meaning is classified. Only dependencies declared by an explicit executable projection enter the runtime graph as `RUNTIME_REQUIRES`; that graph must be acyclic and dependency-closed.
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An executable projection requires an explicit native adapter, event kinds, dependency list and fail-closed behavior. The compiler rejects missing executable dependencies and dependency cycles. The native runtime revalidates schema, source commit, counts, hashes, adapters and dependency closure before returning a protocol set to an organ.
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